Variant report

Variant	rs13159331
Chromosome Location	chr5:107032061-107032062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107016859..107019087-chr5:107031828..107034099,2	MCF-7	breast:
2	chr5:107023431..107026443-chr5:107031056..107034359,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10055714	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076353	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11242644	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12652503	0.82[AMR][1000 genomes]
rs12657057	0.87[AMR][1000 genomes]
rs12657154	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13160470	0.82[AMR][1000 genomes]
rs13161115	0.87[AMR][1000 genomes]
rs13161130	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13161433	0.82[AMR][1000 genomes]
rs13164357	0.84[AMR][1000 genomes]
rs13165345	0.82[AMR][1000 genomes]
rs13167862	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13170512	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13178107	0.82[AMR][1000 genomes]
rs13179374	0.90[CEU][hapmap];0.92[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes]
rs13184509	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1572255	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17351315	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2080938	0.86[AMR][1000 genomes]
rs2080942	0.86[AMR][1000 genomes]
rs2194207	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34685651	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627284	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36044695	0.82[AMR][1000 genomes]
rs4957707	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159505	0.84[AMR][1000 genomes]
rs56215442	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233000	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62357892	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357896	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357900	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7705512	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707690	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709385	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7717640	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7721633	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7723130	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7732784	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736022	0.82[AMR][1000 genomes]
rs897413	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs933066	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107024400-107032200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:107031200-107032600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:107031400-107032800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:107031600-107032400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr5:107031600-107032400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:107031600-107032400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:107031600-107032600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:107031600-107032800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:107031600-107033000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:107031800-107032200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:107031800-107032400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107031800-107032400	Enhancers	Fetal Brain Male	brain
13	chr5:107031800-107032600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:107031800-107032800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:107032000-107032200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr5:107032000-107032200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr5:107032000-107032400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr5:107032000-107032400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr5:107032000-107032400	Active TSS	Brain Anterior Caudate	brain
20	chr5:107032000-107032800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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