Variant report

Variant	rs62357896
Chromosome Location	chr5:107027131-107027132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10055714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11242644	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12657057	0.82[AMR][1000 genomes]
rs12657154	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13159331	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161115	0.82[AMR][1000 genomes]
rs13161130	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13167862	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13170512	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13184509	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1572255	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17351315	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2080938	0.80[AMR][1000 genomes]
rs2080942	0.80[AMR][1000 genomes]
rs2194207	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34685651	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627284	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4957707	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56215442	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233000	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62357892	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357900	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7705512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707690	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709385	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7717640	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7721633	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7723130	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7732784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs897413	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs933066	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107018800-107029000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107024400-107032200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links