Variant report

Variant	rs12657057
Chromosome Location	chr5:107050754-107050755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10055714	0.82[AMR][1000 genomes]
rs10076353	0.82[AMR][1000 genomes]
rs11242644	0.86[ASN][1000 genomes]
rs11738072	1.00[JPT][hapmap]
rs12652503	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12656968	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12657154	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13159331	0.87[AMR][1000 genomes]
rs13160470	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13161115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161130	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13161433	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13164357	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13165345	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13167862	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13170512	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13178107	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13179374	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13184509	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1572255	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17351315	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2080938	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2080942	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2194207	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34685651	0.84[AMR][1000 genomes]
rs35627284	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36044695	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4957707	0.82[AMR][1000 genomes]
rs56159505	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56215442	0.84[AMR][1000 genomes]
rs56233000	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62357892	0.84[AMR][1000 genomes]
rs62357896	0.82[AMR][1000 genomes]
rs62357900	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7705512	0.82[AMR][1000 genomes]
rs7707690	0.84[AMR][1000 genomes]
rs7709385	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7721633	1.00[ASN][1000 genomes]
rs7723130	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7732784	0.82[AMR][1000 genomes]
rs7736022	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs897413	0.86[ASN][1000 genomes]
rs933066	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107050200-107052200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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