Variant report

Variant	rs13164604
Chromosome Location	chr5:75477904-75477905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75469938..75472744-chr5:75476639..75478302,2	K562	blood:

Variant related genes	Relation type
ENSG00000254893	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12188309	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12653182	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13165397	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13166383	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13168590	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13170038	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13179555	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13185101	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13186671	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13187212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13189798	0.98[EUR][1000 genomes]
rs17565925	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28396489	0.98[EUR][1000 genomes]
rs34101768	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34513022	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34637655	0.87[EUR][1000 genomes]
rs34667328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34715685	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34851212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34942575	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34951990	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35273704	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35411065	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35634088	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67451909	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67657625	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67940529	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71630904	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71630905	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72773734	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72773753	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1034853	chr5:75382047-75534981	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv462212	chr5:75388834-75534570	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv598676	chr5:75388834-75534570	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv526084	chr5:75410511-75530494	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75475400-75478600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:75475400-75479200	Enhancers	Placenta	Placenta
3	chr5:75476200-75478000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:75476200-75478400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr5:75476400-75478000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr5:75476600-75478000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:75477400-75478000	ZNF genes & repeats	GM12878-XiMat	blood
8	chr5:75477800-75479600	Weak transcription	Stomach Mucosa	stomach

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