Variant report

Variant	rs13165397
Chromosome Location	chr5:75461687-75461688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12188309	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12653182	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13164604	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13166383	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13168590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13170038	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13179555	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13185101	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13186671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13187212	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13189798	0.86[EUR][1000 genomes]
rs17565925	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28396489	0.86[EUR][1000 genomes]
rs34101768	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34513022	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34667328	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34715685	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34851212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34942575	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34951990	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35273704	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35411065	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35634088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67451909	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67657625	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67940529	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71630904	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71630905	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72773734	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72773753	0.96[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1034853	chr5:75382047-75534981	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv462212	chr5:75388834-75534570	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv598676	chr5:75388834-75534570	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv526084	chr5:75410511-75530494	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv2757119	chr5:75426863-75474780	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv2759351	chr5:75426863-75474780	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv34958	chr5:75429015-75474921	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75461200-75465200	Weak transcription	Brain Anterior Caudate	brain
2	chr5:75461600-75461800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:75461600-75461800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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