Variant report

Variant	rs67657625
Chromosome Location	chr5:75476364-75476365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75011937..75013471-chr5:75474552..75477211,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152359	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12188309	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12653182	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12657109	0.83[ASN][1000 genomes]
rs13164604	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13165397	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13166383	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13168590	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13170038	0.83[EUR][1000 genomes]
rs13179555	0.84[EUR][1000 genomes]
rs13185101	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13186671	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13187212	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189798	0.98[EUR][1000 genomes]
rs17565925	0.82[EUR][1000 genomes]
rs2194177	0.88[ASN][1000 genomes]
rs28396489	0.98[EUR][1000 genomes]
rs34101768	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34513022	0.83[EUR][1000 genomes]
rs34637655	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34667328	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34715685	0.82[EUR][1000 genomes]
rs34851212	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34942575	0.83[EUR][1000 genomes]
rs34951990	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273704	0.82[EUR][1000 genomes]
rs35411065	0.86[EUR][1000 genomes]
rs35634088	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67451909	0.82[EUR][1000 genomes]
rs67940529	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71630904	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71630905	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72773734	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72773753	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1034853	chr5:75382047-75534981	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv462212	chr5:75388834-75534570	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv598676	chr5:75388834-75534570	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv526084	chr5:75410511-75530494	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75470600-75476400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:75471800-75477000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:75472400-75477000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:75472600-75476800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:75472600-75477000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:75472600-75477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:75472800-75476400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:75472800-75476600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr5:75472800-75476600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:75472800-75476800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:75472800-75477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:75474200-75476600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:75475400-75476400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:75475400-75476600	Enhancers	K562	blood
15	chr5:75475400-75478600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:75475400-75479200	Enhancers	Placenta	Placenta
17	chr5:75476000-75476800	Enhancers	GM12878-XiMat	blood
18	chr5:75476200-75477000	Enhancers	Esophagus	oesophagus
19	chr5:75476200-75477800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:75476200-75478000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr5:75476200-75478400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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