Variant report

Variant	rs34951990
Chromosome Location	chr5:75465830-75465831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:75465791-75465835	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000251668	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12188309	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12653182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12657109	0.83[ASN][1000 genomes]
rs13164604	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13165397	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13166383	0.85[EUR][1000 genomes]
rs13168590	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13170038	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13179555	0.87[EUR][1000 genomes]
rs13185101	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13186671	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13187212	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189798	0.94[EUR][1000 genomes]
rs17565925	0.85[EUR][1000 genomes]
rs2194177	0.88[ASN][1000 genomes]
rs28396489	0.94[EUR][1000 genomes]
rs34101768	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34513022	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34637655	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34667328	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34715685	0.85[EUR][1000 genomes]
rs34851212	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34942575	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35273704	0.85[EUR][1000 genomes]
rs35411065	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35634088	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67451909	0.85[EUR][1000 genomes]
rs67657625	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67940529	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71630904	0.89[EUR][1000 genomes]
rs71630905	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72773734	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72773753	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1034853	chr5:75382047-75534981	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv462212	chr5:75388834-75534570	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv598676	chr5:75388834-75534570	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv526084	chr5:75410511-75530494	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv2757119	chr5:75426863-75474780	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv2759351	chr5:75426863-75474780	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv34958	chr5:75429015-75474921	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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