Variant report

Variant	rs13169853
Chromosome Location	chr5:79627662-79627663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11746107	0.80[EUR][1000 genomes]
rs13153590	0.94[AFR][1000 genomes]
rs13159481	0.87[EUR][1000 genomes]
rs13172967	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13182692	0.81[EUR][1000 genomes]
rs34153438	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34852886	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34930487	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35440078	0.85[EUR][1000 genomes]
rs62365916	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6862946	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79627000-79627800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:79627200-79627800	Active TSS	Adipose Nuclei	Adipose
3	chr5:79627400-79627800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:79627400-79627800	Active TSS	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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