Variant report

Variant	rs11746107
Chromosome Location	chr5:79610778-79610779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11738780	0.81[AMR][1000 genomes]
rs11738835	0.81[AMR][1000 genomes]
rs11748899	0.81[AMR][1000 genomes]
rs13159481	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13169853	0.80[EUR][1000 genomes]
rs13171395	0.81[AMR][1000 genomes]
rs13179337	0.81[AMR][1000 genomes]
rs13182692	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13189155	0.81[AMR][1000 genomes]
rs34486095	0.80[AMR][1000 genomes]
rs34755440	0.85[AMR][1000 genomes]
rs34852886	0.80[EUR][1000 genomes]
rs34930487	0.80[EUR][1000 genomes]
rs35440078	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35548365	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62364055	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6862946	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv980690	chr5:79591958-79614381	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79606400-79611400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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