Variant report

Variant	rs11738835
Chromosome Location	chr5:79596175-79596176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11738780	1.00[ASW][hapmap];0.92[CEU][hapmap];0.86[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11741016	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11744962	0.91[CEU][hapmap]
rs11746107	0.81[AMR][1000 genomes]
rs11746474	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11747861	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11748899	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13159481	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13160799	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13171395	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13175327	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13179337	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13184289	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13189155	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34486095	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34755440	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35440078	0.81[EUR][1000 genomes]
rs35548365	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62364042	0.83[EUR][1000 genomes]
rs62364044	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62364055	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6861869	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6864077	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6864237	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv980690	chr5:79591958-79614381	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79595400-79596200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79595600-79596200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:79595800-79596600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:79596000-79596200	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links