Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11738780	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11738835	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11741016	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11747861	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11748899	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13159481	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13160799	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13171395	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13175327	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13179337	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13184289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13189155	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34486095	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34755440	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35548365	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62364042	0.82[EUR][1000 genomes]
rs62364044	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62364055	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6861869	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6864077	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6864237	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79567800-79580400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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