Variant report
| Variant | rs6861869 |
|---|---|
| Chromosome Location | chr5:79593532-79593533 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11738780 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11738835 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11741016 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11746474 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11747861 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11748899 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13159481 | 0.83[EUR][1000 genomes] |
| rs13160799 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13171395 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13175327 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13179337 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13184289 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13189155 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs34486095 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs34755440 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs35440078 | 0.81[EUR][1000 genomes] |
| rs35548365 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62364042 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62364043 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs62364044 | 0.82[EUR][1000 genomes] |
| rs62364055 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6864077 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6864237 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv980690 | chr5:79591958-79614381 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79580600-79595400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
