Variant report
| Variant | rs35440078 |
|---|---|
| Chromosome Location | chr5:79604673-79604674 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | YY1 | chr5:79604364-79604717 | H1-hESC | embryonic stem cell: | n/a | chr5:79604548-79604560 |
| 2 | MAX | chr5:79604350-79604758 | K562 | blood: | n/a | n/a |
| 3 | YY1 | chr5:79604432-79604764 | K562 | blood: | n/a | chr5:79604548-79604560 |
| 4 | MYC | chr5:79604518-79604718 | K562 | blood: | n/a | n/a |
| 5 | YY1 | chr5:79604378-79604727 | K562 | blood: | n/a | chr5:79604548-79604560 |
| 6 | YY1 | chr5:79604357-79604741 | H1-hESC | embryonic stem cell: | n/a | chr5:79604548-79604560 |
| 7 | CTCF | chr5:79604640-79604790 | GM12868 | blood: | n/a | n/a |
| 8 | MYC | chr5:79604426-79604718 | K562 | blood: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:79387918..79390143-chr5:79603120..79605214,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251828 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11738780 | 0.81[EUR][1000 genomes] |
| rs11738835 | 0.81[EUR][1000 genomes] |
| rs11741016 | 0.81[EUR][1000 genomes] |
| rs11746107 | 0.98[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11747861 | 0.81[EUR][1000 genomes] |
| rs11748899 | 0.81[EUR][1000 genomes] |
| rs13159481 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13169853 | 0.85[EUR][1000 genomes] |
| rs13175327 | 0.81[EUR][1000 genomes] |
| rs13179337 | 0.81[EUR][1000 genomes] |
| rs13182692 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs34153438 | 0.84[EUR][1000 genomes] |
| rs34755440 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs34852886 | 0.85[EUR][1000 genomes] |
| rs34930487 | 0.85[EUR][1000 genomes] |
| rs35548365 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62364055 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6861869 | 0.81[EUR][1000 genomes] |
| rs6862946 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv980690 | chr5:79591958-79614381 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79598800-79605400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr5:79604400-79604800 | Active TSS | Spleen | Spleen |
