Variant report

Variant	rs34930487
Chromosome Location	chr5:79638240-79638241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11746107	0.80[EUR][1000 genomes]
rs13159481	0.87[EUR][1000 genomes]
rs13169853	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13172967	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13182692	0.81[EUR][1000 genomes]
rs34153438	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34852886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35440078	0.85[EUR][1000 genomes]
rs35458795	0.80[AMR][1000 genomes]
rs62365916	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62365948	0.80[AMR][1000 genomes]
rs62365949	0.80[AMR][1000 genomes]
rs6862946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79638000-79638600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79638200-79638800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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