Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11738780	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11738835	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11746474	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11747861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11748899	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13159481	0.83[EUR][1000 genomes]
rs13160799	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13171395	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13175327	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13179337	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13184289	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13189155	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34486095	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34755440	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35440078	0.81[EUR][1000 genomes]
rs35548365	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62364042	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62364043	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs62364044	0.82[EUR][1000 genomes]
rs62364055	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6861869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6864077	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6864237	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv980690	chr5:79591958-79614381	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79595400-79596200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79595600-79596200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:79595800-79596600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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