Variant report

Variant	rs62364055
Chromosome Location	chr5:79601680-79601681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11738780	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11738835	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11741016	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11746107	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11746474	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11747861	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11748899	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13159481	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13160799	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13171395	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13175327	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13179337	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13182692	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13184289	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13189155	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34486095	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34755440	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35440078	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35548365	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6861869	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6864077	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6864237	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv980690	chr5:79591958-79614381	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79598800-79605400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79600800-79601800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:79601400-79602200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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