Variant report

Variant	rs13172214
Chromosome Location	chr5:60949939-60949940
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11738335	0.86[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs11750531	0.86[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs16893320	0.85[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs16893322	0.86[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs35438183	0.89[ASN][1000 genomes]
rs7714841	0.86[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60946000-60950800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:60946800-60952800	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:60947000-60951400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:60947000-60952600	Weak transcription	Brain Anterior Caudate	brain
6	chr5:60948200-60952600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:60948600-60952800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:60949000-60954200	Weak transcription	Liver	Liver
9	chr5:60949600-60950200	Enhancers	Brain Germinal Matrix	brain
10	chr5:60949800-60950200	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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