Variant report

Variant	rs35438183
Chromosome Location	chr5:60956220-60956221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11738335	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11741636	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11750531	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13172214	0.89[ASN][1000 genomes]
rs13175381	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16893320	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16893322	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4700424	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6880041	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6883938	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6899064	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7728181	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60950800-60957200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:60952200-60956600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:60953600-60963000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:60954800-60956600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:60955400-60956400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:60955400-60956600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr5:60955400-60956800	Enhancers	Brain Hippocampus Middle	brain
9	chr5:60955400-60957000	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:60955400-60957000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr5:60955400-60957200	Enhancers	Brain Anterior Caudate	brain
12	chr5:60955600-60962000	Weak transcription	Brain Angular Gyrus	brain
13	chr5:60955800-60956400	Enhancers	Fetal Intestine Small	intestine
14	chr5:60956000-60956400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr5:60956000-60962000	Weak transcription	Pancreas	Pancrea
16	chr5:60956200-60956400	Flanking Active TSS	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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