Variant report

Variant	rs7728181
Chromosome Location	chr5:60947302-60947303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11738335	1.00[CEU][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11741636	0.84[EUR][1000 genomes]
rs11750531	1.00[CEU][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13175381	0.84[EUR][1000 genomes]
rs16893320	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16893322	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs253487	0.84[AFR][1000 genomes]
rs35438183	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4700424	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs6880041	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6883938	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6899064	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7714841	1.00[CEU][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60942800-60948600	Enhancers	Adipose Nuclei	Adipose
3	chr5:60945400-60947400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr5:60946000-60950800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:60946800-60952800	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:60947000-60951400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:60947000-60952600	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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