Variant report

Variant	rs11741636
Chromosome Location	chr5:60967801-60967802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60960558..60962945-chr5:60966490..60968029,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11738335	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11746049	0.89[ASN][1000 genomes]
rs11747208	0.89[ASN][1000 genomes]
rs11750531	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11750644	0.89[ASN][1000 genomes]
rs13156487	0.87[ASN][1000 genomes]
rs13168562	0.89[ASN][1000 genomes]
rs13175381	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501845	0.87[ASN][1000 genomes]
rs16893320	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16893322	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16893553	0.89[ASN][1000 genomes]
rs35438183	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36049	0.93[AFR][1000 genomes]
rs4700424	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896690	0.89[ASN][1000 genomes]
rs7704929	0.81[ASN][1000 genomes]
rs7728181	0.84[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
3	chr5:60962600-60968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:60962600-60968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:60963400-60968400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:60964000-60968600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:60964200-60968200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:60964200-60968200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:60964200-60968600	Weak transcription	Fetal Kidney	kidney
11	chr5:60964200-60969000	Weak transcription	Adipose Nuclei	Adipose
12	chr5:60964200-60969000	Weak transcription	Pancreas	Pancrea
13	chr5:60964400-60968200	Weak transcription	Colonic Mucosa	Colon
14	chr5:60964400-60968200	Weak transcription	Fetal Intestine Large	intestine
15	chr5:60964400-60968200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:60964400-60968800	Weak transcription	Brain Angular Gyrus	brain
17	chr5:60964400-60970400	Weak transcription	Small Intestine	intestine
18	chr5:60964600-60968200	Weak transcription	Fetal Intestine Small	intestine
19	chr5:60964600-60968200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:60965000-60968200	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:60965000-60968800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr5:60965200-60968200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:60965400-60968200	Weak transcription	NHEK	skin
24	chr5:60965400-60968400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:60965600-60968200	Weak transcription	Brain Anterior Caudate	brain
26	chr5:60965600-60968400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:60965600-60968400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr5:60965600-60968400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:60965600-60968400	Weak transcription	HMEC	breast
30	chr5:60965600-60968600	Weak transcription	Fetal Lung	lung
31	chr5:60965600-60968800	Weak transcription	Spleen	Spleen
32	chr5:60965800-60968600	Weak transcription	Brain Substantia Nigra	brain
33	chr5:60966200-60968200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:60966200-60970800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr5:60967600-60970800	Enhancers	Primary B cells from peripheral blood	blood

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