Variant report

Variant	rs36049
Chromosome Location	chr5:60968475-60968476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11741636	0.93[AFR][1000 genomes]
rs13175381	0.82[AFR][1000 genomes]
rs1580859	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs16893687	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs2455388	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs253177	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs253487	0.86[EUR][1000 genomes]
rs36032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs410850	0.85[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs444797	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4700424	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs6883938	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs72647204	0.86[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
3	chr5:60962600-60968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:60964000-60968600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:60964200-60968600	Weak transcription	Fetal Kidney	kidney
7	chr5:60964200-60969000	Weak transcription	Adipose Nuclei	Adipose
8	chr5:60964200-60969000	Weak transcription	Pancreas	Pancrea
9	chr5:60964400-60968800	Weak transcription	Brain Angular Gyrus	brain
10	chr5:60964400-60970400	Weak transcription	Small Intestine	intestine
11	chr5:60965000-60968800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:60965600-60968600	Weak transcription	Fetal Lung	lung
13	chr5:60965600-60968800	Weak transcription	Spleen	Spleen
14	chr5:60965800-60968600	Weak transcription	Brain Substantia Nigra	brain
15	chr5:60966200-60970800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:60967600-60970800	Enhancers	Primary B cells from peripheral blood	blood
17	chr5:60968000-60970200	Enhancers	Primary B cells from cord blood	blood
18	chr5:60968000-60970200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:60968000-60972000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:60968200-60968600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr5:60968200-60968800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:60968200-60968800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:60968200-60969000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr5:60968200-60969400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:60968200-60969400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr5:60968200-60969400	Enhancers	NHEK	skin
27	chr5:60968200-60969600	Enhancers	Fetal Muscle Leg	muscle
28	chr5:60968200-60970600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr5:60968200-60971200	Enhancers	Brain Anterior Caudate	brain
30	chr5:60968200-60971200	Enhancers	Brain Hippocampus Middle	brain
31	chr5:60968200-60971400	Enhancers	Colonic Mucosa	Colon
32	chr5:60968200-60971400	Enhancers	Fetal Intestine Large	intestine
33	chr5:60968200-60971400	Enhancers	Fetal Intestine Small	intestine
34	chr5:60968400-60968600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr5:60968400-60968800	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr5:60968400-60968800	Enhancers	Right Ventricle	heart
37	chr5:60968400-60969000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr5:60968400-60969200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:60968400-60969200	Enhancers	Stomach Mucosa	stomach
40	chr5:60968400-60969200	Enhancers	HSMMtube	muscle
41	chr5:60968400-60969400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr5:60968400-60969400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:60968400-60969600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:60968400-60969600	Enhancers	Primary hematopoietic stem cells	blood
45	chr5:60968400-60969600	Enhancers	Placenta	Placenta
46	chr5:60968400-60970200	Enhancers	HMEC	breast
47	chr5:60968400-60971800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:60968400-60971800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr5:60968400-60972400	Enhancers	Brain Cingulate Gyrus	brain

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