Variant report

Variant	rs444797
Chromosome Location	chr5:60942192-60942193
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2455388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs253177	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs253487	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36032	1.00[CEU][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs36049	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs410850	0.85[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs444797	LRRC70	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60937600-60945400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:60938400-60945400	Weak transcription	Brain Anterior Caudate	brain
4	chr5:60938400-60945400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:60941600-60943800	Weak transcription	Brain Substantia Nigra	brain
6	chr5:60941600-60945600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:60941600-60945600	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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