Variant report

Variant	rs36032
Chromosome Location	chr5:60960544-60960545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13175381	0.91[AFR][1000 genomes]
rs1580859	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs16893687	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs2455388	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs253177	1.00[CEU][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs253487	0.91[EUR][1000 genomes]
rs36049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs410850	0.85[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs444797	1.00[CEU][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs4700424	0.82[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6883938	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs72647204	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36032	LRRC70	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60953600-60963000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:60955600-60962000	Weak transcription	Brain Angular Gyrus	brain
4	chr5:60956000-60962000	Weak transcription	Pancreas	Pancrea
5	chr5:60956400-60963000	Weak transcription	Fetal Intestine Small	intestine
6	chr5:60956800-60961800	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:60957000-60961800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:60957000-60962000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:60957200-60961800	Weak transcription	Brain Anterior Caudate	brain
10	chr5:60957200-60961800	Weak transcription	Brain Substantia Nigra	brain
11	chr5:60960000-60962000	Weak transcription	Spleen	Spleen
12	chr5:60960400-60960600	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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