Variant report

Variant	rs4700424
Chromosome Location	chr5:60963675-60963676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C5orf43-4	chr5:60963584-60963704	ENSG00000248529.1
2	lnc-C5orf43-4	chr5:60963584-60963704	ENSG00000248529.1
3	lnc-C5orf43-4	chr5:60963584-60963704	NONHSAT101680
4	lnc-C5orf43-4	chr5:60963584-60963704	NR_109910

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11738335	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11740126	1.00[JPT][hapmap]
rs11741636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743702	1.00[JPT][hapmap]
rs11746049	0.80[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11747208	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11747263	1.00[JPT][hapmap]
rs11750531	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11750644	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12520360	1.00[JPT][hapmap]
rs13156487	0.87[ASN][1000 genomes]
rs13163936	1.00[JPT][hapmap]
rs13168562	0.89[ASN][1000 genomes]
rs13175381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13175459	1.00[JPT][hapmap]
rs13186555	1.00[JPT][hapmap]
rs1501845	0.81[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16893320	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16893322	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16893553	0.89[ASN][1000 genomes]
rs35438183	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36032	0.82[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs36049	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs4700430	1.00[JPT][hapmap]
rs6870236	1.00[JPT][hapmap]
rs6880041	1.00[CEU][hapmap]
rs6883938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896690	0.89[ASN][1000 genomes]
rs7704929	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7714841	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs7728181	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60960800-60965400	Weak transcription	Ovary	ovary
3	chr5:60962000-60965600	Enhancers	Brain Cingulate Gyrus	brain
4	chr5:60962200-60965000	Enhancers	Brain Hippocampus Middle	brain
5	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
6	chr5:60962400-60963800	Enhancers	Brain Substantia Nigra	brain
7	chr5:60962400-60963800	Weak transcription	Pancreas	Pancrea
8	chr5:60962400-60963800	Weak transcription	Right Atrium	heart
9	chr5:60962400-60964200	Enhancers	Adipose Nuclei	Adipose
10	chr5:60962400-60964400	Enhancers	Liver	Liver
11	chr5:60962400-60965000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr5:60962400-60965600	Enhancers	Brain Anterior Caudate	brain
13	chr5:60962600-60963800	Weak transcription	Brain Angular Gyrus	brain
14	chr5:60962600-60963800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:60962600-60968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:60962600-60968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:60963000-60964000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:60963000-60964200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr5:60963000-60964400	Enhancers	Fetal Intestine Large	intestine
21	chr5:60963000-60964600	Enhancers	Fetal Intestine Small	intestine
22	chr5:60963200-60965600	Enhancers	Spleen	Spleen
23	chr5:60963400-60964200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:60963400-60964600	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr5:60963400-60968400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr5:60963600-60964000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr5:60963600-60964200	Enhancers	Fetal Kidney	kidney
28	chr5:60963600-60964400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr5:60963600-60965400	Enhancers	Placenta	Placenta

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