Variant report

Variant	rs11746049
Chromosome Location	chr5:60972283-60972284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60971252..60973687-chr5:60984617..60986306,2	MCF-7	breast:
2	chr5:60971077..60972798-chr5:60973698..60975756,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1123763	0.87[EUR][1000 genomes]
rs1123764	0.87[EUR][1000 genomes]
rs11738335	0.82[JPT][hapmap]
rs11738462	0.87[EUR][1000 genomes]
rs11738494	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11740126	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11741636	0.89[ASN][1000 genomes]
rs11743702	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11747208	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747263	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11748959	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11750531	0.82[JPT][hapmap]
rs11750644	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514378	0.87[EUR][1000 genomes]
rs12517109	0.95[EUR][1000 genomes]
rs12519709	0.87[EUR][1000 genomes]
rs12519720	0.87[EUR][1000 genomes]
rs12520360	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes]
rs12521924	0.87[EUR][1000 genomes]
rs12522405	0.87[EUR][1000 genomes]
rs13154578	0.87[EUR][1000 genomes]
rs13156487	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13156637	0.95[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13159935	0.87[EUR][1000 genomes]
rs13160822	0.87[EUR][1000 genomes]
rs13163936	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13168562	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13170002	0.92[EUR][1000 genomes]
rs13175381	0.89[ASN][1000 genomes]
rs13175459	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13186555	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1501845	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893320	0.82[JPT][hapmap]
rs16893322	0.82[JPT][hapmap]
rs16893553	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429209	0.95[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699979	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699980	0.92[EUR][1000 genomes]
rs4700424	0.80[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4700429	0.94[EUR][1000 genomes]
rs4700430	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4700432	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4700433	0.92[EUR][1000 genomes]
rs6870236	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6872706	0.87[EUR][1000 genomes]
rs6883938	0.89[ASN][1000 genomes]
rs6896690	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704929	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7714841	0.82[JPT][hapmap]
rs7722134	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60968400-60972400	Enhancers	Brain Cingulate Gyrus	brain
3	chr5:60968800-60972400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr5:60970400-60972400	Enhancers	Pancreas	Pancrea
5	chr5:60971200-60975200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:60971400-60974800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:60971400-60975200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:60971400-60975200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:60971400-60975400	Weak transcription	Fetal Intestine Small	intestine
10	chr5:60971400-60975800	Weak transcription	Fetal Intestine Large	intestine
11	chr5:60971600-60972400	Enhancers	Brain Hippocampus Middle	brain
12	chr5:60971600-60973400	Enhancers	Brain Substantia Nigra	brain
13	chr5:60971800-60975200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:60972000-60972400	Enhancers	Fetal Muscle Trunk	muscle
15	chr5:60972000-60975200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:60972200-60972400	Enhancers	Colonic Mucosa	Colon
17	chr5:60972200-60974600	Weak transcription	Rectal Mucosa Donor 31	rectum

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