Variant report

Variant	rs4699980
Chromosome Location	chr5:61003422-61003423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:61002483..61004885-chr5:61012609..61014219,2	MCF-7	breast:
2	chr5:60993683..60995271-chr5:61002348..61004961,2	K562	blood:

Variant related genes	Relation type
ENSG00000248529	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1123763	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123764	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738462	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738494	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740126	0.94[EUR][1000 genomes]
rs11743702	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11746049	0.92[EUR][1000 genomes]
rs11747208	0.92[EUR][1000 genomes]
rs11747263	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11748959	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11750644	0.91[EUR][1000 genomes]
rs12514378	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12517109	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12519709	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519720	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520360	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12521924	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522405	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154578	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156487	0.94[EUR][1000 genomes]
rs13156637	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159935	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160822	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163936	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13168562	0.92[EUR][1000 genomes]
rs13170002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13175459	0.94[EUR][1000 genomes]
rs13186555	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1501845	0.94[EUR][1000 genomes]
rs16893553	0.92[EUR][1000 genomes]
rs17429209	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950221	0.81[AFR][1000 genomes]
rs4699979	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700429	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4700430	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700432	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870236	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6872706	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896690	0.92[EUR][1000 genomes]
rs7704929	0.86[EUR][1000 genomes]
rs7722134	0.92[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60997800-61015200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:60998000-61003600	Weak transcription	Brain Hippocampus Middle	brain

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