Variant report

Variant	rs6896690
Chromosome Location	chr5:60975484-60975485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60971077..60972798-chr5:60973698..60975756,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1123763	0.87[EUR][1000 genomes]
rs1123764	0.87[EUR][1000 genomes]
rs11738462	0.87[EUR][1000 genomes]
rs11738494	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11740126	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11741636	0.89[ASN][1000 genomes]
rs11743702	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11746049	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747208	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747263	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11748959	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11750644	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514378	0.87[EUR][1000 genomes]
rs12517109	0.95[EUR][1000 genomes]
rs12519709	0.87[EUR][1000 genomes]
rs12519720	0.87[EUR][1000 genomes]
rs12520360	0.95[EUR][1000 genomes]
rs12521924	0.87[EUR][1000 genomes]
rs12522405	0.87[EUR][1000 genomes]
rs13154578	0.87[EUR][1000 genomes]
rs13156487	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13156637	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13159935	0.87[EUR][1000 genomes]
rs13160822	0.87[EUR][1000 genomes]
rs13163936	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13168562	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13170002	0.92[EUR][1000 genomes]
rs13175381	0.89[ASN][1000 genomes]
rs13175459	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13186555	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1501845	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893553	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429209	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699979	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699980	0.92[EUR][1000 genomes]
rs4700424	0.89[ASN][1000 genomes]
rs4700429	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4700430	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4700432	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4700433	0.92[EUR][1000 genomes]
rs6870236	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6872706	0.87[EUR][1000 genomes]
rs6883938	0.89[ASN][1000 genomes]
rs7704929	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7722134	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60971400-60975800	Weak transcription	Fetal Intestine Large	intestine
2	chr5:60972400-60975800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr5:60972400-60980400	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:60974600-60976200	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr5:60974800-60975600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:60975000-60975600	Enhancers	Brain Substantia Nigra	brain
7	chr5:60975200-60975600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:60975200-60975600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:60975200-60975600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:60975200-60975600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:60975200-60975800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:60975200-60975800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:60975200-60976000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:60975200-60976400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:60975400-60977000	Enhancers	Fetal Intestine Small	intestine

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