Variant report

Variant	rs6883938
Chromosome Location	chr5:60962986-60962987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11738335	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11741636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746049	0.89[ASN][1000 genomes]
rs11747208	0.80[CEU][hapmap];0.89[ASN][1000 genomes]
rs11750531	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11750644	0.89[ASN][1000 genomes]
rs13156487	0.87[ASN][1000 genomes]
rs13168562	0.89[ASN][1000 genomes]
rs13175381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501845	0.87[ASN][1000 genomes]
rs16893320	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16893322	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16893553	0.89[ASN][1000 genomes]
rs35438183	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36032	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs36049	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs4700424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880041	1.00[CEU][hapmap]
rs6896690	0.89[ASN][1000 genomes]
rs7704929	0.81[ASN][1000 genomes]
rs7714841	1.00[CEU][hapmap]
rs7728181	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3470515	chr5:60962705-60963440	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3470516	chr5:60962840-60963321	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60953600-60963000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:60956400-60963000	Weak transcription	Fetal Intestine Small	intestine
4	chr5:60960800-60965400	Weak transcription	Ovary	ovary
5	chr5:60962000-60965600	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:60962200-60965000	Enhancers	Brain Hippocampus Middle	brain
7	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
8	chr5:60962400-60963400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:60962400-60963400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:60962400-60963800	Enhancers	Brain Substantia Nigra	brain
11	chr5:60962400-60963800	Weak transcription	Pancreas	Pancrea
12	chr5:60962400-60963800	Weak transcription	Right Atrium	heart
13	chr5:60962400-60964200	Enhancers	Adipose Nuclei	Adipose
14	chr5:60962400-60964400	Enhancers	Liver	Liver
15	chr5:60962400-60965000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr5:60962400-60965600	Enhancers	Brain Anterior Caudate	brain
17	chr5:60962600-60963000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:60962600-60963400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr5:60962600-60963600	Weak transcription	Lung	lung
20	chr5:60962600-60963600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:60962600-60963800	Weak transcription	Brain Angular Gyrus	brain
22	chr5:60962600-60963800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:60962600-60968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:60962600-60968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:60962800-60963200	Weak transcription	Spleen	Spleen

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