Variant report

Variant	rs11747208
Chromosome Location	chr5:60973577-60973578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60971252..60973687-chr5:60984617..60986306,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1123763	0.87[EUR][1000 genomes]
rs1123764	0.87[EUR][1000 genomes]
rs11738335	0.82[JPT][hapmap]
rs11738462	0.87[EUR][1000 genomes]
rs11738494	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11740126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11741636	0.89[ASN][1000 genomes]
rs11743702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11746049	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11748959	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11750531	0.82[JPT][hapmap]
rs11750644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514378	0.87[EUR][1000 genomes]
rs12517109	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12519709	0.87[EUR][1000 genomes]
rs12519720	0.87[EUR][1000 genomes]
rs12520360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs12521924	0.87[EUR][1000 genomes]
rs12522405	0.87[EUR][1000 genomes]
rs13154578	0.87[EUR][1000 genomes]
rs13156487	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13156637	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13159935	0.87[EUR][1000 genomes]
rs13160822	0.87[EUR][1000 genomes]
rs13163936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13168562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13170002	0.92[EUR][1000 genomes]
rs13175381	0.89[ASN][1000 genomes]
rs13175459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13186555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1501845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893320	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs16893322	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs16893553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429209	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699979	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699980	0.92[EUR][1000 genomes]
rs4700424	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4700429	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4700430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4700432	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4700433	0.92[EUR][1000 genomes]
rs6870236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6872706	0.87[EUR][1000 genomes]
rs6880041	0.80[CEU][hapmap]
rs6883938	0.80[CEU][hapmap];0.89[ASN][1000 genomes]
rs6896690	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704929	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7714841	0.82[JPT][hapmap]
rs7722134	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60971200-60975200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:60971400-60974800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:60971400-60975200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:60971400-60975200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:60971400-60975400	Weak transcription	Fetal Intestine Small	intestine
7	chr5:60971400-60975800	Weak transcription	Fetal Intestine Large	intestine
8	chr5:60971800-60975200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:60972000-60975200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:60972200-60974600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:60972400-60975800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:60972400-60980400	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:60973400-60975000	Weak transcription	Brain Substantia Nigra	brain

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