Variant report

Variant	rs4699979
Chromosome Location	chr5:61003342-61003343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:61002483..61004885-chr5:61012609..61014219,2	MCF-7	breast:
2	chr5:60993683..60995271-chr5:61002348..61004961,2	K562	blood:

Variant related genes	Relation type
ENSG00000248529	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1123763	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123764	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738462	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738494	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740126	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11743702	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11746049	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11747208	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11747263	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11748959	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11750644	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12514378	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12517109	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12519709	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519720	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520360	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12521924	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522405	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154578	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156487	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13156637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159935	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160822	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163936	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13168562	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13170002	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13175459	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13186555	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1501845	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16893553	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17429209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699980	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700429	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4700430	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700433	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870236	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6872706	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896690	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7704929	0.95[CEU][hapmap];0.80[CHB][hapmap];0.86[EUR][1000 genomes]
rs7722134	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60997800-61015200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:60998000-61003600	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:61001400-61003400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:61002600-61003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:61002600-61003400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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