Variant report

Variant	rs11738462
Chromosome Location	chr5:61013776-61013777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:61002483..61004885-chr5:61012609..61014219,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1123763	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123764	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738494	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740126	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[EUR][1000 genomes]
rs11743702	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs11746049	0.95[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs11747208	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[EUR][1000 genomes]
rs11747263	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[EUR][1000 genomes]
rs11748959	0.91[EUR][1000 genomes]
rs11750644	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[EUR][1000 genomes]
rs12514378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12517109	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12519709	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519720	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520360	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12521924	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522405	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156487	0.88[EUR][1000 genomes]
rs13156637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159935	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160822	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163936	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[EUR][1000 genomes]
rs13168562	0.87[EUR][1000 genomes]
rs13170002	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13175459	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs13186555	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[EUR][1000 genomes]
rs1501845	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs16893320	0.83[CEU][hapmap]
rs16893553	0.87[EUR][1000 genomes]
rs17429209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699980	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700429	0.85[EUR][1000 genomes]
rs4700430	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs4700432	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700433	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870236	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[EUR][1000 genomes]
rs6872706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896690	0.87[EUR][1000 genomes]
rs7704929	0.95[CEU][hapmap];0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs7722134	0.87[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60997800-61015200	Weak transcription	Brain Inferior Temporal Lobe	brain

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