Variant report

Variant	rs1501845
Chromosome Location	chr5:60976610-60976611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60975947..60978578-chr5:60982445..60984027,2	K562	blood:

Variant related genes	Relation type
ENSG00000178722	Chromatin interaction
ENSG00000248529	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1123763	0.88[EUR][1000 genomes]
rs1123764	0.88[EUR][1000 genomes]
rs11738335	0.82[JPT][hapmap]
rs11738462	0.88[EUR][1000 genomes]
rs11738494	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11740126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11741636	0.87[ASN][1000 genomes]
rs11743702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11746049	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11747208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11747263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11748959	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11750531	0.82[JPT][hapmap]
rs11750644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12514378	0.88[EUR][1000 genomes]
rs12517109	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12519709	0.88[EUR][1000 genomes]
rs12519720	0.88[EUR][1000 genomes]
rs12520360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12521924	0.88[EUR][1000 genomes]
rs12522405	0.88[EUR][1000 genomes]
rs13154578	0.88[EUR][1000 genomes]
rs13156487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156637	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13159935	0.88[EUR][1000 genomes]
rs13160822	0.88[EUR][1000 genomes]
rs13163936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13168562	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13170002	0.94[EUR][1000 genomes]
rs13175381	0.87[ASN][1000 genomes]
rs13175459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13186555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16893320	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs16893322	0.82[JPT][hapmap]
rs16893553	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17429209	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4699979	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4699980	0.94[EUR][1000 genomes]
rs4700424	0.81[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4700429	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4700430	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4700432	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4700433	0.94[EUR][1000 genomes]
rs6870236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6872706	0.88[EUR][1000 genomes]
rs6883938	0.87[ASN][1000 genomes]
rs6896690	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7704929	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7714841	0.82[JPT][hapmap]
rs7722134	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1501845	FLJ37543	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60972400-60980400	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:60975400-60977000	Enhancers	Fetal Intestine Small	intestine
3	chr5:60975600-60979000	Weak transcription	Brain Substantia Nigra	brain
4	chr5:60975600-60982400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:60975800-60976800	Enhancers	Fetal Intestine Large	intestine
6	chr5:60976400-60978200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:60976400-60981000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:60976600-60976800	Enhancers	Small Intestine	intestine
9	chr5:60976600-60982200	Weak transcription	Rectal Mucosa Donor 31	rectum

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