Variant report

Variant	rs11750531
Chromosome Location	chr5:60952547-60952548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11738335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740126	0.82[JPT][hapmap]
rs11741636	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11743702	0.82[JPT][hapmap]
rs11746049	0.82[JPT][hapmap]
rs11747208	0.82[JPT][hapmap]
rs11750644	0.82[JPT][hapmap]
rs12520360	0.82[JPT][hapmap]
rs13163936	0.82[JPT][hapmap]
rs13172214	0.86[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs13175381	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13186555	0.82[JPT][hapmap]
rs1501845	0.82[JPT][hapmap]
rs16893320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35438183	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4700424	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4700430	0.82[JPT][hapmap]
rs6870236	0.82[JPT][hapmap]
rs6880041	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6883938	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6899064	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7704929	0.82[JPT][hapmap]
rs7714841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7728181	1.00[CEU][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60946800-60952800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:60947000-60952600	Weak transcription	Brain Anterior Caudate	brain
4	chr5:60948200-60952600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:60948600-60952800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:60949000-60954200	Weak transcription	Liver	Liver
7	chr5:60950200-60953600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:60950800-60957200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:60951200-60952600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:60952200-60952600	Weak transcription	Fetal Kidney	kidney
11	chr5:60952200-60953600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:60952200-60956600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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