Variant report

Variant	rs6880041
Chromosome Location	chr5:60940776-60940777
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11738335	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11747208	0.80[CEU][hapmap]
rs11750531	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16893320	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16893322	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2455388	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs253487	0.91[AFR][1000 genomes]
rs35438183	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4700424	1.00[CEU][hapmap]
rs6883938	1.00[CEU][hapmap]
rs6899064	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714841	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs7728181	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60937400-60941000	Weak transcription	Hela-S3	cervix
3	chr5:60937600-60945400	Weak transcription	Brain Angular Gyrus	brain
4	chr5:60938400-60945400	Weak transcription	Brain Anterior Caudate	brain
5	chr5:60938400-60945400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:60939200-60941400	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:60939600-60941600	Strong transcription	Brain Substantia Nigra	brain
8	chr5:60939800-60941000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:60940200-60941600	Strong transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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