Variant report

Variant	rs2455388
Chromosome Location	chr5:60939334-60939335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs253177	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs253487	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36032	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs36049	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs410850	0.84[CEU][hapmap]
rs444797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6880041	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs6899064	0.85[AFR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60934800-60940000	Weak transcription	Pancreas	Pancrea
3	chr5:60937200-60939600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:60937400-60941000	Weak transcription	Hela-S3	cervix
5	chr5:60937600-60945400	Weak transcription	Brain Angular Gyrus	brain
6	chr5:60938000-60940200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:60938400-60945400	Weak transcription	Brain Anterior Caudate	brain
8	chr5:60938400-60945400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:60938800-60939600	Weak transcription	Brain Substantia Nigra	brain
10	chr5:60939200-60941400	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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