Variant report

Variant	rs253177
Chromosome Location	chr5:60945612-60945613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2455388	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs253487	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36032	1.00[CEU][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs36049	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs410850	0.85[CEU][hapmap]
rs444797	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs253177	LRRC70	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60942800-60948600	Enhancers	Adipose Nuclei	Adipose
3	chr5:60945400-60946000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:60945400-60946600	Enhancers	Brain Angular Gyrus	brain
5	chr5:60945400-60947000	Enhancers	Brain Anterior Caudate	brain
6	chr5:60945400-60947400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:60945600-60946200	Enhancers	Fetal Muscle Trunk	muscle
8	chr5:60945600-60946600	Enhancers	Brain Cingulate Gyrus	brain
9	chr5:60945600-60946800	Enhancers	Brain Hippocampus Middle	brain
10	chr5:60945600-60946800	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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