Variant report

Variant	rs253487
Chromosome Location	chr5:60944590-60944591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2455388	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs253177	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36032	0.91[EUR][1000 genomes]
rs36049	0.86[EUR][1000 genomes]
rs444797	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6880041	0.91[AFR][1000 genomes]
rs6899064	0.91[AFR][1000 genomes]
rs7728181	0.84[AFR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60937600-60945400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:60938400-60945400	Weak transcription	Brain Anterior Caudate	brain
4	chr5:60938400-60945400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:60941600-60945600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:60941600-60945600	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:60942800-60948600	Enhancers	Adipose Nuclei	Adipose
8	chr5:60944400-60945600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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