Variant report

Variant	rs410850
Chromosome Location	chr5:60971778-60971779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60971252..60973687-chr5:60984617..60986306,2	MCF-7	breast:
2	chr5:60971077..60972798-chr5:60973698..60975756,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1580859	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs16893687	0.95[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs2455388	0.84[CEU][hapmap]
rs253177	0.85[CEU][hapmap]
rs36032	0.85[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs36049	0.85[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs444797	0.85[CEU][hapmap]
rs72647204	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs410850	NUP155	trans	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60968000-60972000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:60968400-60971800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:60968400-60971800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:60968400-60972400	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:60968800-60972000	Enhancers	Brain Angular Gyrus	brain
7	chr5:60968800-60972400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr5:60969400-60971800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:60969400-60972200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr5:60969600-60972000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr5:60970400-60972000	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr5:60970400-60972200	Enhancers	Brain Germinal Matrix	brain
13	chr5:60970400-60972400	Enhancers	Pancreas	Pancrea
14	chr5:60970800-60972000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:60971200-60972000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:60971200-60975200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:60971400-60972200	Weak transcription	Colonic Mucosa	Colon
18	chr5:60971400-60974800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:60971400-60975200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:60971400-60975200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:60971400-60975400	Weak transcription	Fetal Intestine Small	intestine
22	chr5:60971400-60975800	Weak transcription	Fetal Intestine Large	intestine
23	chr5:60971600-60972000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr5:60971600-60972200	Enhancers	Brain Anterior Caudate	brain
25	chr5:60971600-60972400	Enhancers	Brain Hippocampus Middle	brain
26	chr5:60971600-60973400	Enhancers	Brain Substantia Nigra	brain

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