Variant report

Variant	rs16893320
Chromosome Location	chr5:60953099-60953100
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60626402..60629468-chr5:60952559..60956981,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130449	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11738335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740126	0.82[JPT][hapmap]
rs11741636	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11743702	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs11746049	0.82[JPT][hapmap]
rs11747208	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs11750531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750644	0.82[JPT][hapmap]
rs12520360	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs13156637	0.83[CEU][hapmap]
rs13163936	0.82[JPT][hapmap]
rs13172214	0.85[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs13175381	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13186555	0.82[JPT][hapmap]
rs1501845	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs16893322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35438183	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4700424	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4700430	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs6870236	0.82[JPT][hapmap]
rs6880041	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6883938	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6899064	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7704929	0.82[JPT][hapmap]
rs7714841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7728181	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60949000-60954200	Weak transcription	Liver	Liver
3	chr5:60950200-60953600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:60950800-60957200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:60952200-60953600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:60952200-60956600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:60952600-60953400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:60952600-60953600	Enhancers	Brain Anterior Caudate	brain
9	chr5:60952600-60955000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:60952600-60955000	Enhancers	Brain Substantia Nigra	brain
11	chr5:60952600-60955000	Enhancers	Fetal Kidney	kidney
12	chr5:60952800-60954400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:60952800-60954600	Enhancers	Brain Germinal Matrix	brain
14	chr5:60952800-60954800	Enhancers	Brain Hippocampus Middle	brain
15	chr5:60953000-60953200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:60953000-60953200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:60953000-60953400	Enhancers	Brain Cingulate Gyrus	brain

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