Variant report
| Variant | rs1318414 |
|---|---|
| Chromosome Location | chr13:93553681-93553682 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs12428589 | 0.81[CHB][hapmap] |
| rs12429680 | 0.85[CHB][hapmap] |
| rs12431303 | 0.83[CHB][hapmap] |
| rs17267453 | 0.98[EUR][1000 genomes] |
| rs1890198 | 0.81[CHB][hapmap] |
| rs2095475 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2148225 | 0.85[CHB][hapmap] |
| rs2182367 | 0.81[CHB][hapmap] |
| rs7333121 | 0.81[CHB][hapmap] |
| rs7988257 | 0.81[CHB][hapmap] |
| rs8000315 | 0.85[CHB][hapmap] |
| rs9556215 | 0.81[CHB][hapmap] |
| rs9556218 | 0.85[CHB][hapmap] |
| rs9556219 | 0.81[CHB][hapmap] |
| rs9556222 | 0.80[CHB][hapmap] |
| rs9556227 | 0.81[CHB][hapmap] |
| rs9556228 | 0.81[CHB][hapmap] |
| rs9556229 | 0.85[CHB][hapmap] |
| rs9556234 | 0.99[ASN][1000 genomes] |
| rs9561151 | 0.86[CHB][hapmap] |
| rs9561152 | 0.81[CHB][hapmap] |
| rs9561163 | 0.81[CHB][hapmap] |
| rs9561165 | 0.81[CHB][hapmap] |
| rs9561166 | 0.85[CHB][hapmap] |
| rs9561168 | 0.84[CHB][hapmap] |
| rs9561169 | 0.81[CHB][hapmap] |
| rs9561170 | 0.81[CHB][hapmap] |
| rs9561172 | 0.81[CHB][hapmap] |
| rs9561173 | 0.85[CHB][hapmap] |
| rs9561177 | 0.81[CHB][hapmap] |
| rs9561178 | 0.85[CHB][hapmap] |
| rs9561179 | 0.85[CHB][hapmap] |
| rs9561180 | 0.81[CHB][hapmap] |
| rs9561181 | 0.81[CHB][hapmap] |
| rs9561182 | 0.81[CHB][hapmap] |
| rs9561183 | 0.85[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv900907 | chr13:93472377-93597799 | Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv2760298 | chr13:93496826-93738391 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv2761811 | chr13:93545188-93556876 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93553000-93554000 | Weak transcription | NH-A | brain |
