Variant report
| Variant | rs9556234 |
|---|---|
| Chromosome Location | chr13:93547182-93547183 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12428589 | 1.00[EUR][1000 genomes] |
| rs12429124 | 1.00[EUR][1000 genomes] |
| rs12430678 | 1.00[EUR][1000 genomes] |
| rs1318414 | 0.99[ASN][1000 genomes] |
| rs1933194 | 1.00[EUR][1000 genomes] |
| rs2095475 | 0.98[ASN][1000 genomes] |
| rs35226443 | 1.00[EUR][1000 genomes] |
| rs7987140 | 1.00[EUR][1000 genomes] |
| rs9556205 | 1.00[EUR][1000 genomes] |
| rs9556216 | 1.00[EUR][1000 genomes] |
| rs9556217 | 1.00[EUR][1000 genomes] |
| rs9556224 | 1.00[EUR][1000 genomes] |
| rs9561127 | 1.00[EUR][1000 genomes] |
| rs9561128 | 1.00[EUR][1000 genomes] |
| rs9561143 | 1.00[EUR][1000 genomes] |
| rs9561164 | 1.00[EUR][1000 genomes] |
| rs9561169 | 1.00[EUR][1000 genomes] |
| rs9561175 | 1.00[EUR][1000 genomes] |
| rs9561176 | 1.00[EUR][1000 genomes] |
| rs9561177 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv900907 | chr13:93472377-93597799 | Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv2760298 | chr13:93496826-93738391 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv515697 | chr13:93541484-93549341 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| 5 | esv2761811 | chr13:93545188-93556876 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93546600-93547200 | Enhancers | Fetal Stomach | stomach |
| 2 | chr13:93546600-93547800 | Enhancers | Fetal Lung | lung |
