Variant report

Variant	rs9561128
Chromosome Location	chr13:93372523-93372524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12428589	1.00[EUR][1000 genomes]
rs12429124	1.00[EUR][1000 genomes]
rs12430678	1.00[EUR][1000 genomes]
rs1933194	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35226443	1.00[EUR][1000 genomes]
rs7987140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556205	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9556216	1.00[EUR][1000 genomes]
rs9556217	1.00[EUR][1000 genomes]
rs9556224	1.00[EUR][1000 genomes]
rs9556234	1.00[EUR][1000 genomes]
rs9561127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561131	0.81[ASN][1000 genomes]
rs9561143	1.00[EUR][1000 genomes]
rs9561164	1.00[EUR][1000 genomes]
rs9561169	1.00[EUR][1000 genomes]
rs9561175	1.00[EUR][1000 genomes]
rs9561176	1.00[EUR][1000 genomes]
rs9561177	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93371600-93372600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr13:93371600-93374200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:93371800-93372600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:93371800-93372600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr13:93372000-93372600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:93372000-93372600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:93372000-93372600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:93372200-93373000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:93372400-93373600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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