Variant report

Variant	rs9556216
Chromosome Location	chr13:93457010-93457011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12428589	0.95[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12429124	1.00[EUR][1000 genomes]
rs12429680	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12430678	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12431303	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1590556	0.98[ASN][1000 genomes]
rs1890198	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1933194	1.00[EUR][1000 genomes]
rs2031585	0.90[CHB][hapmap]
rs2148225	0.95[CHB][hapmap]
rs2182367	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs35226443	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6492628	0.81[ASN][1000 genomes]
rs7333121	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7984465	0.94[ASN][1000 genomes]
rs7987140	1.00[EUR][1000 genomes]
rs7988257	0.95[CHB][hapmap]
rs8000315	0.95[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs9556205	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556215	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9556217	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556218	0.95[CHB][hapmap];0.87[JPT][hapmap];0.98[ASN][1000 genomes]
rs9556219	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9556222	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9556224	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9556227	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9556228	0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs9556229	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs9556234	1.00[EUR][1000 genomes]
rs9561127	1.00[EUR][1000 genomes]
rs9561128	1.00[EUR][1000 genomes]
rs9561143	1.00[EUR][1000 genomes]
rs9561151	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9561152	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9561163	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9561164	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561165	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9561166	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs9561168	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9561169	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9561170	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9561172	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9561173	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs9561175	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561176	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561177	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561178	0.95[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs9561179	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs9561180	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs9561181	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9561182	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9561183	0.95[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93454400-93458000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:93454600-93458200	Weak transcription	Aorta	Aorta
3	chr13:93454800-93458200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:93454800-93458400	Weak transcription	Fetal Kidney	kidney
5	chr13:93455000-93457600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:93455000-93458200	Enhancers	NHLF	lung
7	chr13:93455200-93457600	Enhancers	HSMM	muscle
8	chr13:93455200-93458000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:93455400-93458000	Weak transcription	Stomach Mucosa	stomach
10	chr13:93455600-93458200	Weak transcription	Adipose Nuclei	Adipose
11	chr13:93456000-93458200	Enhancers	Osteobl	bone
12	chr13:93456200-93458200	Weak transcription	NHEK	skin
13	chr13:93456400-93457400	Enhancers	NH-A	brain
14	chr13:93456800-93457200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:93456800-93457200	Weak transcription	NHDF-Ad	bronchial
16	chr13:93457000-93457200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:93457000-93458200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links