Variant report

Variant	rs2031585
Chromosome Location	chr13:93474899-93474900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12428589	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs12429680	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs12431303	0.89[CHB][hapmap]
rs1326104	0.90[CEU][hapmap]
rs13378443	0.80[CEU][hapmap]
rs1409266	0.90[CEU][hapmap]
rs1590556	0.83[ASN][1000 genomes]
rs1890198	0.91[CHB][hapmap]
rs2148225	0.95[CHB][hapmap]
rs2182367	0.91[CHB][hapmap]
rs35226443	0.82[ASN][1000 genomes]
rs4451828	0.81[YRI][hapmap]
rs6492628	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7333121	0.91[CHB][hapmap]
rs7336987	0.86[AFR][1000 genomes]
rs7984465	0.81[ASN][1000 genomes]
rs7988257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs8000315	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs9556215	0.91[CHB][hapmap]
rs9556216	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs9556217	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs9556218	0.90[CEU][hapmap];0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs9556219	0.91[CHB][hapmap]
rs9556222	0.90[CHB][hapmap]
rs9556224	0.81[ASN][1000 genomes]
rs9556225	0.92[AFR][1000 genomes]
rs9556227	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs9556228	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs9556229	0.95[CHB][hapmap]
rs9561151	1.00[CHB][hapmap]
rs9561152	0.91[CHB][hapmap]
rs9561163	0.91[CHB][hapmap]
rs9561164	0.82[ASN][1000 genomes]
rs9561165	0.90[CHB][hapmap]
rs9561166	0.95[CHB][hapmap]
rs9561168	1.00[CHB][hapmap]
rs9561169	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs9561170	0.91[CHB][hapmap]
rs9561172	0.90[CHB][hapmap]
rs9561173	0.95[CHB][hapmap]
rs9561175	0.82[ASN][1000 genomes]
rs9561176	0.82[ASN][1000 genomes]
rs9561177	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs9561178	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs9561179	0.95[CHB][hapmap]
rs9561180	0.91[CHB][hapmap]
rs9561181	0.91[CHB][hapmap]
rs9561182	0.91[CHB][hapmap]
rs9561183	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs9589627	0.82[CEU][hapmap]
rs9589630	0.90[CEU][hapmap]
rs9589632	0.90[CEU][hapmap]
rs9589633	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900907	chr13:93472377-93597799	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links