Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11619029	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842684	1.00[JPT][hapmap]
rs12429680	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs13378443	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[ASN][1000 genomes]
rs1409263	1.00[ASW][hapmap]
rs1409266	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16947935	1.00[ASN][1000 genomes]
rs16947937	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17188767	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs17267453	1.00[ASN][1000 genomes]
rs2031585	0.90[CEU][hapmap]
rs56867090	1.00[ASN][1000 genomes]
rs59628939	1.00[ASN][1000 genomes]
rs60229870	1.00[ASN][1000 genomes]
rs67916048	1.00[ASN][1000 genomes]
rs72642616	1.00[ASN][1000 genomes]
rs7988257	0.90[CEU][hapmap]
rs8002249	1.00[JPT][hapmap]
rs9301839	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9556218	1.00[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs9561183	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9584066	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9584069	1.00[JPT][hapmap]
rs9589627	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9589630	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9589632	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9589633	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv900907	chr13:93472377-93597799	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: