Variant report
| Variant | rs16947937 |
|---|---|
| Chromosome Location | chr13:93480929-93480930 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11619029 | 1.00[ASN][1000 genomes] |
| rs11840577 | 1.00[JPT][hapmap] |
| rs11842684 | 1.00[JPT][hapmap] |
| rs1326104 | 1.00[JPT][hapmap] |
| rs13378443 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1409266 | 1.00[JPT][hapmap] |
| rs16947935 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17267453 | 1.00[ASN][1000 genomes] |
| rs4451828 | 0.92[CEU][hapmap] |
| rs56867090 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59628939 | 1.00[ASN][1000 genomes] |
| rs60229870 | 1.00[ASN][1000 genomes] |
| rs67916048 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72642616 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8002249 | 1.00[JPT][hapmap] |
| rs9301836 | 0.85[CEU][hapmap] |
| rs9301839 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9556228 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs9556229 | 1.00[CEU][hapmap] |
| rs9561178 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs9584066 | 0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9584069 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs9589627 | 1.00[JPT][hapmap] |
| rs9589630 | 1.00[JPT][hapmap] |
| rs9589632 | 1.00[JPT][hapmap] |
| rs9589633 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv456072 | chr13:93419362-93506864 | Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv562746 | chr13:93419362-93506864 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv900907 | chr13:93472377-93597799 | Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93480000-93481400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
