Variant report

Variant	rs9301839
Chromosome Location	chr13:93497315-93497316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93495939..93498709-chr13:93498716..93500691,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11619029	1.00[ASN][1000 genomes]
rs11842684	1.00[JPT][hapmap]
rs1326104	1.00[JPT][hapmap]
rs13378443	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1409266	1.00[ASW][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap]
rs16947935	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16947937	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17267453	1.00[ASN][1000 genomes]
rs4451828	0.91[CEU][hapmap]
rs56867090	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59628939	1.00[ASN][1000 genomes]
rs60229870	1.00[ASN][1000 genomes]
rs67916048	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72642616	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002249	1.00[JPT][hapmap]
rs9301836	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs9556228	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9556229	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9561178	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs9584066	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584069	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9589627	1.00[JPT][hapmap]
rs9589630	1.00[JPT][hapmap]
rs9589632	1.00[JPT][hapmap]
rs9589633	1.00[ASW][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900907	chr13:93472377-93597799	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93496600-93499600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links