Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11619029	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11840577	1.00[JPT][hapmap]
rs11842684	1.00[JPT][hapmap]
rs12429680	0.89[CEU][hapmap]
rs1326104	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs1409266	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap]
rs1590556	0.96[EUR][1000 genomes]
rs16947935	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16947937	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17267453	1.00[ASN][1000 genomes]
rs2031585	0.80[CEU][hapmap]
rs56867090	1.00[ASN][1000 genomes]
rs59628939	1.00[ASN][1000 genomes]
rs60229870	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67916048	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72642616	1.00[ASN][1000 genomes]
rs7988257	0.80[CEU][hapmap]
rs8002249	1.00[JPT][hapmap]
rs9301839	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9556218	0.89[CEU][hapmap]
rs9561183	0.89[CEU][hapmap]
rs9584066	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9584069	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9589627	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs9589630	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9589632	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9589633	1.00[ASW][hapmap];0.89[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93454400-93458000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:93454600-93458200	Weak transcription	Aorta	Aorta
3	chr13:93454800-93458200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:93454800-93458400	Weak transcription	Fetal Kidney	kidney
5	chr13:93455000-93457600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:93455000-93458200	Enhancers	NHLF	lung
7	chr13:93455200-93457600	Enhancers	HSMM	muscle
8	chr13:93455200-93458000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:93455400-93458000	Weak transcription	Stomach Mucosa	stomach
10	chr13:93455600-93458200	Weak transcription	Adipose Nuclei	Adipose
11	chr13:93456000-93458200	Enhancers	Osteobl	bone
12	chr13:93456200-93458200	Weak transcription	NHEK	skin
13	chr13:93456400-93457000	Enhancers	HSMMtube	muscle
14	chr13:93456400-93457400	Enhancers	NH-A	brain
15	chr13:93456800-93457200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:93456800-93457200	Weak transcription	NHDF-Ad	bronchial

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