Variant report

Variant	rs59628939
Chromosome Location	chr13:93414051-93414052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11619029	1.00[ASN][1000 genomes]
rs13378443	1.00[ASN][1000 genomes]
rs16947935	1.00[ASN][1000 genomes]
rs16947937	1.00[ASN][1000 genomes]
rs17267453	1.00[ASN][1000 genomes]
rs56867090	1.00[ASN][1000 genomes]
rs60229870	1.00[ASN][1000 genomes]
rs67916048	1.00[ASN][1000 genomes]
rs72642616	1.00[ASN][1000 genomes]
rs9301839	1.00[ASN][1000 genomes]
rs9584066	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93412600-93415000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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