Variant report

Variant	rs9584066
Chromosome Location	chr13:93483279-93483280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11619029	1.00[ASN][1000 genomes]
rs11840577	1.00[JPT][hapmap]
rs11842684	1.00[JPT][hapmap]
rs1326104	1.00[JPT][hapmap]
rs13378443	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1409266	1.00[ASW][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap]
rs16947935	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16947937	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17267453	1.00[ASN][1000 genomes]
rs4451828	0.82[CEU][hapmap]
rs56867090	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59628939	1.00[ASN][1000 genomes]
rs60229870	1.00[ASN][1000 genomes]
rs67916048	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72642616	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002249	1.00[JPT][hapmap]
rs9301836	0.85[TSI][hapmap]
rs9301839	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556228	0.90[CEU][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9556229	0.91[CEU][hapmap];1.00[TSI][hapmap]
rs9561178	0.91[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs9584069	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9589627	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs9589630	1.00[JPT][hapmap]
rs9589632	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9589633	1.00[ASW][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900907	chr13:93472377-93597799	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9584066	NRN1	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93482600-93483400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:93482800-93483400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links